If not, please replace iqtree with actual path to executable. Note that it is assumed that iqtree executable was already copied into system search path. For Windows usersĪ few typically analyses are listed in the following. See below the guide for Windows users and Mac OS X users. Now you need to open a Terminal (or Console) to run IQ-TREE. Copy all files in bin folder to your system search path such that you can run IQ-TREE by entering iqtree from the Terminal. tar.gz (Linux) file to create a directory iqtree-X.Y.Z-OS, where X.Y.Z is the version number and OS is the operating system (Windows, MacOSX or Linux). IQ-TREE for Windows, MacOSX and Linux can be downloaded here.
Anaconda: conda install -c bioconda iqtree.Debian Linux: sudo apt-get install iqtree.Ready made IQ-TREE packages are available for the following distributions/repositories (command to install iqtree):
For reasons of performance, IQ-TREE is a command-line program, i.e., IQ-TREE needs to be run from a terminal/console (command prompt under Windows).
